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SRX5028421: GSM3484373: UBD_4: CSB UBDmut. Rep4; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 32.1M spots, 9.6G bases, 2.7Gb downloads

Submitted by: NCBI (GEO)
Study: Convergence of Cockayne Syndrome Group A and B Proteins at rRNA Transcription through Nucleolin Regulation
show Abstracthide Abstract
Cockayne Syndrome (CS) is a rare neurodegenerative disease characterized by short stature, cachexia, sun-sensitivity, accelerated aging, and short lifespan. Mutations in two human genes, ERCC8/CSA and ERCC6/CSB, are causative for CS and the protein products of these genes, CSA and CSB, while structurally unrelated, play roles in DNA repair and other aspects of DNA metabolism in human cells. Many clinical and molecular features of CS remain poorly understood, and it has been suggested that CSA and CSB regulate transcription of rDNA genes and ribosome biogenesis. The goal of this study was to investigate the dysregulation of rRNA synthesis in CS. Here, we report that Nucleolin (Ncl), a nucleolar protein that regulates rRNA synthesis and ribosome biogenesis, interacts specifically with CSA and CSB. In addition, CSA induces ubiquitination of Ncl, enhances binding of CSB to Ncl, and CSA and CSB both stimulate binding of Ncl to rDNA and subsequent rRNA synthesis. These findings suggest that CSA and CSB are positive regulators of rRNA synthesis via Ncl regulation. A majority of CS patients carry mutations in CSA and CSB and present with similar clinical features, thus our findings may provide novel insights into disease mechanism and the neuropathological features of CS. Overall design: Examination of CSB UBD mutation expression compared to WT CSB in CS1AN cells
Sample: UBD_4: CSB UBDmut. Rep4
SAMN10450033 • SRS4059974 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cell are harvested with Buffer RLT. RNA was harvested using Rneasy mini kit extraction Kit (Invitrogen cat no: 74104) Briefly, mRNA from Eukaryote organisms is purified from total RNA using poly-T oligo-attached magnetic beads (For prokaryotes, mRNA was purified through the removal of rRNA by using kit). The mRNA is first fragmented randomly by addition of fragmentation buffer. According to demand of customer, we have NEB library and strand specific library to choose.
Experiment attributes:
GEO Accession: GSM3484373
Links:
Runs: 1 run, 32.1M spots, 9.6G bases, 2.7Gb
Run# of Spots# of BasesSizePublished
SRR820922832,064,0809.6G2.7Gb2020-03-16

ID:
6781893

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